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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
115
total RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
194
DNA binding
115
Transcription
DNA accessibility
Target of assay
169
histone
169
histone modification
94
broad histone mark
75
narrow histone mark
17
transcription factor
10
RNA binding protein
8
control
Date released
230
May, 2021
45
May, 2020
40
May, 2024
10
February, 2023
6
May, 2022
Available data
255
bigWig
186
bam
154
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
331
Homo sapiens
Biosample type
231
primary cell
53
tissue
42
in vitro differentiated cells
5
cell line
Organ
40
heart
12
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
207
T1D
124
AMP
Genome assembly (visualization)
220
GRCh38
215
hg19
Lab
AMP-T2D consortium
291
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
lab.title!
AMP-T2D consortium
organ_slims!
vasculature
BIOSAMPLE
ASSAY
331 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
left cardiac atrium
40
islet of Langerhans
11
pancreas
1
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
cell line
EndoC_BH1
3
2
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