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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
20
ChIP-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
103
Transcription
20
DNA binding
DNA accessibility
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
94
May, 2021
45
May, 2020
5
February, 2023
Available data
101
bigWig
96
bam
96
tsv
2
bed bed3+
Organism
144
Homo sapiens
Biosample type
116
primary cell
22
in vitro differentiated cells
5
cell line
1
tissue
Organ
pancreas
1
bone element
bone marrow
1
connective tissue
1
thymus
Project
117
T1D
27
AMP
Genome assembly (visualization)
101
hg19
96
GRCh38
Lab
2012
AMP-T2D consortium
144
Kyle Gaulton, UCSD
124
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
bone marrow
pancreas
target.investigated_as!
histone
BIOSAMPLE
ASSAY
144 results
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total RNA-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
in vitro differentiated cells
embryonic stem cell
5
17
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
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