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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 154ChIP-seq
  • 115total RNA-seq
  • 17pCHi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 154DNA binding
  • 115Transcription
  • DNA accessibility
Target of assay
  • 134histone
  • 134histone modification
  • 74broad histone mark
  • 60narrow histone mark
  • 12transcription factor
  • 8control
  • 5RNA binding protein
Date released
  • 230May, 2021
  • 45May, 2020
  • 10February, 2023
  • 6May, 2022
Available data
  • 215bigWig
  • 186bam
  • 114bed narrowPeak
  • 96tsv
  • 84tagAlign
  • 6fastq
  • 6txt
  • 2bed bed3+
Organism
  • 291Homo sapiens
Biosample type
  • 231primary cell
  • 42in vitro differentiated cells
  • 13tissue
  • 5cell line
Organ
  • 12pancreas
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 207T1D
  • 84AMP
Genome assembly (visualization)
  • 215hg19
  • 180GRCh38
Lab
  • 3350AMP-T2D consortium
  • 291Kyle Gaulton, UCSD
  • 227Klaus Kaestner, Upenn
  • 61Katalin Susztak, Upenn
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 37Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 5inconsistent ontology term
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

291 results

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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte84531
CD8-positive, alpha-beta T cell3341
B cell21
naive B cel21
naive thymus-derived CD8-positive, alpha-beta T cell21
in vitro differentiated cells
embryonic stem cell375
tissue
islet of Langerhans11
pancreas1
thymus1
cell line
EndoC_BH132
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