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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
180
total RNA-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
530
DNA binding
184
Transcription
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
50
November, 2018
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
669
bam
579
bigWig
461
fastq
396
bed narrowPeak
352
bigBed narrowPeak
165
tsv
82
tagAlign
58
bed broadPeak
58
bigBed broadPeak
5
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
727
Homo sapiens
Biosample type
369
cell line
336
tissue
15
in vitro differentiated cells
7
primary cell
Organ
769
pancreas
727
liver
647
connective tissue
482
adipose tissue
395
epithelium
249
brain
224
heart
172
vasculature
168
blood vessel
147
bone element
kidney
90
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
29
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
727
AMP
Genome assembly (visualization)
579
hg19
520
GRCh38
Lab
707
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
August, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
727 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
2
tissue
liver
145
167
3
1
1
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
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