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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
Assay category
178
DNA binding
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
76
November, 2017
25
May, 2019
13
July, 2019
12
February, 2020
October, 2017
2
March, 2020
Available data
175
bigWig
172
bam
164
bed narrowPeak
88
bigBed narrowPeak
87
tagAlign
23
tsv
12
bed broadPeak
6
bigBed broadPeak
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
206
Homo sapiens
Biosample type
196
tissue
10
primary cell
Organ
677
pancreas
654
liver
611
connective tissue
459
adipose tissue
331
epithelium
295
heart
206
brain
179
kidney
156
vasculature
153
blood vessel
143
bone element
83
artery
61
limb
55
musculature of body
54
blood
54
bodily fluid
30
embryo
29
nerve
24
eye
17
vein
15
spleen
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
206
AMP
Genome assembly (visualization)
174
GRCh38
128
hg19
Lab
206
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
February, 2023
October, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
206 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
tissue
layer of hippocampus
20
substantia nigra
14
1
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
13
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
brain pericyte
1
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