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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
56
total RNA-seq
6
single cell RNA-seq
3
Hi-C
1
pCHi-C
Assay category
102
DNA binding
62
Transcription
DNA accessibility
3
3D chromatin structure
Target of assay
71
histone
71
histone modification
45
broad histone mark
26
narrow histone mark
22
control
9
transcription factor
5
RNA binding protein
Date released
58
February, 2021
50
May, 2019
41
October, 2019
July, 2019
6
August, 2021
6
November, 2017
4
March, 2020
3
February, 2020
Available data
155
bam
132
bigWig
75
bed narrowPeak
71
bigBed narrowPeak
63
tsv
6
bed broadPeak
6
bigBed broadPeak
6
fastq
6
tagAlign
3
hic
2
bedpe bed3+
Organism
168
Homo sapiens
Biosample type
85
tissue
58
cell line
25
primary cell
Organ
767
pancreas
752
liver
632
connective tissue
471
adipose tissue
388
epithelium
295
heart
233
brain
181
kidney
168
vasculature
165
blood vessel
147
bone element
90
artery
73
limb
60
blood
60
bodily fluid
51
musculature of body
40
nerve
37
embryo
28
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
skeleton
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
168
AMP
Genome assembly (visualization)
135
hg19
128
GRCh38
Lab
168
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA accessibility
month_released!
July, 2019
organ_slims!
intestine
skeleton
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
tibial artery
23
1
aorta
13
1
4
1
1
ascending aorta
16
1
thoracic aorta
16
coronary artery
5
1
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
primary cell
endothelial cell of umbilical vein
17
2
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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