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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
29
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
26
August, 2017
10
July, 2019
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
26
bigWig
19
bed narrowPeak
15
tagAlign
14
bam
13
bed broadPeak
9
tsv
6
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
51
Homo sapiens
Biosample type
48
tissue
3
primary cell
Organ
773
pancreas
762
liver
638
connective tissue
483
adipose tissue
395
epithelium
311
heart
249
brain
188
kidney
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
60
blood
60
bodily fluid
51
musculature of body
40
nerve
37
embryo
26
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
30
hg19
12
GRCh38
Lab
51
AMP-T2D consortium
assay_slims!
DNA accessibility
month_released!
June, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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