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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
7
total RNA-seq
6
Hi-C
1
WGBS
Assay category
DNA accessibility
19
DNA binding
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
23
October, 2019
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2019
Available data
24
bam
7
tsv
5
bigWig
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
29
tissue
4
primary cell
Organ
660
liver
597
pancreas
572
connective tissue
451
adipose tissue
303
epithelium
219
heart
161
kidney
147
bone element
107
vasculature
104
blood vessel
72
artery
62
brain
59
blood
59
bodily fluid
29
limb
28
musculature of body
26
eye
25
embryo
17
spleen
16
nerve
10
lung
4
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
6
hg19
5
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA accessibility
month_released!
November, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
5
tibial artery
5
1
gastrocnemius medialis
1
4
muscle of leg
1
1
primary cell
endothelial cell of umbilical vein
2
2
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