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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
89
total RNA-seq
6
RRBS
3
WGBS
Assay category
246
DNA binding
89
Transcription
DNA accessibility
9
DNA methylation
Target of assay
167
histone modification
166
histone
89
broad histone mark
76
narrow histone mark
44
control
35
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
365
May, 2021
344
August, 2017
340
November, 2017
280
February, 2021
274
October, 2019
241
May, 2020
236
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
94
December, 2017
88
July, 2019
80
April, 2019
62
November, 2018
59
March, 2020
59
September, 2018
56
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
23
February, 2020
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
3
May, 2023
1
March, 2019
Available data
261
fastq
256
bam
246
bigWig
130
bed narrowPeak
89
tsv
77
tagAlign
38
bed broadPeak
31
bigBed narrowPeak
29
bed bed3+
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
337
Homo sapiens
Biosample type
223
tissue
67
in vitro differentiated cells
54
primary cell
Organ
183
pancreas
123
connective tissue
adipose tissue
52
liver
26
epithelium
26
musculature of body
Project
344
AMP
Genome assembly (visualization)
252
hg19
227
GRCh38
Lab
344
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
October, 2017
organ_slims!
adipose tissue
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
344 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
WGBS
tissue
islet of Langerhans
42
89
liver
48
1
3
skeletal muscle tissue
22
4
pancreas
14
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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