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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
213
ChIP-seq
89
total RNA-seq
6
RRBS
3
WGBS
1
Hi-C
Assay category
213
DNA binding
89
Transcription
DNA accessibility
9
DNA methylation
1
3D chromatin structure
Target of assay
130
histone modification
129
histone
69
broad histone mark
60
narrow histone mark
41
transcription factor
40
control
6
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
363
May, 2021
280
October, 2019
277
August, 2017
241
May, 2020
234
August, 2021
216
February, 2021
166
July, 2018
120
May, 2019
101
May, 2022
96
February, 2023
94
December, 2017
82
July, 2019
80
April, 2019
78
November, 2018
59
September, 2018
58
March, 2020
56
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
23
February, 2020
19
June, 2019
15
October, 2017
10
December, 2019
10
November, 2020
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
3
May, 2023
1
March, 2019
Available data
243
fastq
237
bam
229
bigWig
118
bed narrowPeak
89
tsv
63
tagAlign
61
bigBed narrowPeak
38
bed broadPeak
22
bed bed3+
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
305
Homo sapiens
Biosample type
230
tissue
54
primary cell
28
cell line
Organ
183
pancreas
connective tissue
56
adipose tissue
53
liver
27
blood
27
bodily fluid
26
epithelium
26
musculature of body
7
spleen
Project
312
AMP
Genome assembly (visualization)
234
hg19
209
GRCh38
Lab
312
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
312 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
WGBS
Hi-C
tissue
islet of Langerhans
42
89
liver
48
1
3
skeletal muscle tissue
22
4
pancreas
14
spleen
7
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
cell line
GM12878
27
HepG2
1
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