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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 296ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 6RRBS
Assay category
  • 296DNA binding
  • 89Transcription
  • 15DNA methylation
  • DNA accessibility
Target of assay
  • 199histone modification
  • 198histone
  • 109broad histone mark
  • 88narrow histone mark
  • 50control
  • 47transcription factor
  • 8RNA binding protein
  • 3chromatin remodeller
Date released
  • 666February, 2021
  • 406November, 2017
  • 400August, 2017
  • 365May, 2021
  • 281October, 2019
  • 241May, 2020
  • 237August, 2021
  • 168July, 2018
  • 120May, 2019
  • 101May, 2022
  • 100February, 2023
  • 100July, 2019
  • 94December, 2017
  • 80April, 2019
  • 78November, 2018
  • 76October, 2018
  • 60March, 2020
  • 59September, 2018
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 35November, 2019
  • 31June, 2019
  • 30January, 2019
  • 25February, 2020
  • 15October, 2017
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 6September, 2017
  • 5January, 2018
  • 5March, 2023
  • 4August, 2018
  • 4May, 2023
  • 4October, 2022
  • 3June, 2018
  • 1March, 2019
Available data
  • 278fastq
  • 272bam
  • 262bigWig
  • 132bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 39bed broadPeak
  • 33bed bed3+
  • 32bigBed narrowPeak
  • 13bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 393Homo sapiens
Biosample type
  • 279tissue
  • 67in vitro differentiated cells
  • 54primary cell
Organ
  • 183pancreas
  • 123connective tissue
  • 56adipose tissue
  • 52liver
  • 26epithelium
  • 26musculature of body
Project
  • 400AMP
Genome assembly (visualization)
  • 266hg19
  • 242GRCh38
Lab
  • 400AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

400 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans4289
liver4831
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
pancreas14
in vitro differentiated cells
adipocyte67
primary cell
skeletal muscle myoblast151
pancreatic alpha cell13
pancreatic beta cell13
pancreatic endocrine cell12
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