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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
total RNA-seq
43
ChIP-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
172
Transcription
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
666
February, 2021
406
November, 2017
400
August, 2017
363
May, 2021
242
October, 2019
241
May, 2020
229
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
81
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
35
November, 2019
June, 2019
30
January, 2019
26
February, 2018
24
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
March, 2023
4
August, 2018
4
January, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
115
tsv
57
txt
37
bigWig
31
bam
30
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
228
Homo sapiens
Biosample type
159
tissue
36
cell line
30
in vitro differentiated cells
4
primary cell
Organ
92
heart
60
kidney
35
liver
embryo
6
blood vessel
6
epithelium
6
vasculature
4
pancreas
3
connective tissue
2
artery
1
adipose tissue
Project
229
AMP
Genome assembly (visualization)
40
hg19
23
GRCh38
Lab
133
AMP-T2D consortium
58
Katalin Susztak, Upenn
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
June, 2019
organ_slims!
embryo
nerve
BIOSAMPLE
ASSAY
229 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
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