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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
single cell RNA-seq
73
total RNA-seq
39
ChIP-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
177
Transcription
DNA accessibility
39
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
576
February, 2021
400
November, 2017
318
May, 2021
241
May, 2020
227
August, 2021
217
August, 2017
216
October, 2019
108
May, 2019
80
April, 2019
80
July, 2019
75
December, 2017
74
November, 2018
55
February, 2023
54
May, 2022
49
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
June, 2019
23
October, 2018
22
February, 2020
15
October, 2017
9
April, 2020
9
July, 2018
8
April, 2018
5
January, 2018
5
March, 2023
4
December, 2019
4
May, 2023
4
November, 2020
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
120
tsv
57
txt
42
bigWig
35
bam
27
bed narrowPeak
20
tagAlign
2
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
226
Homo sapiens
Biosample type
155
tissue
42
cell line
30
in vitro differentiated cells
Organ
92
heart
60
kidney
35
liver
8
embryo
6
blood vessel
epithelium
6
vasculature
pancreas
3
connective tissue
artery
1
adipose tissue
Project
227
AMP
Genome assembly (visualization)
45
hg19
28
GRCh38
Lab
133
AMP-T2D consortium
58
Katalin Susztak, Upenn
34
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
artery
epithelium
pancreas
BIOSAMPLE
ASSAY
227 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
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