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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 74total RNA-seq
  • 43ChIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3Hi-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 180Transcription
  • DNA accessibility
  • 43DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 20histone
  • 20histone modification
  • 12control
  • 11narrow histone mark
  • 11transcription factor
  • 9broad histone mark
  • 1RNA binding protein
Date released
  • 666February, 2021
  • 406November, 2017
  • 400August, 2017
  • 365May, 2021
  • 281October, 2019
  • 241May, 2020
  • 237August, 2021
  • 168July, 2018
  • 120May, 2019
  • 101May, 2022
  • 100February, 2023
  • 100July, 2019
  • 94December, 2017
  • 80April, 2019
  • 78November, 2018
  • 76October, 2018
  • 60March, 2020
  • 59September, 2018
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 35November, 2019
  • 31June, 2019
  • 30January, 2019
  • 25February, 2020
  • 15October, 2017
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 6September, 2017
  • 5January, 2018
  • 5March, 2023
  • 4August, 2018
  • 4May, 2023
  • 4October, 2022
  • 3June, 2018
  • 1March, 2019
Available data
  • 123tsv
  • 57txt
  • 45bigWig
  • 39bam
  • 30bed narrowPeak
  • 24tagAlign
  • 5bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 236Homo sapiens
Biosample type
  • 159tissue
  • 44cell line
  • 30in vitro differentiated cells
  • 4primary cell
Organ
  • 92heart
  • 60kidney
  • 35liver
  • 8embryo
  • 6blood vessel
  • 6epithelium
  • 6vasculature
  • 4pancreas
  • 3connective tissue
  • 2artery
  • 1adipose tissue
Project
  • 237AMP
Genome assembly (visualization)
  • 48hg19
  • 31GRCh38
Lab
  • 141AMP-T2D consortium
  • 58Katalin Susztak, Upenn
  • 36Bing Ren, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

237 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney8491
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
aorta4
aortic valve4
pulmonary valve4
tricuspid valve4
mitral valve3
cardiac atrium2
cardiac ventricle2
interventricular septum2
islet of Langerhans11
pulmonary artery2
subcutaneous adipose tissue1
cell line
HepG2918211
H1-hESC8
EndoC_BH12
HEK293T2
Synthesized DNA1
in vitro differentiated cells
neural progenitor cell721
adipocyte1
osteoblast1
primary cell
hepatocyte4
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