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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
42
ChIP-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
563
Transcription
DNA accessibility
42
DNA binding
6
DNA methylation
1
3D chromatin structure
Target of assay
33
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
588
bam
580
bigWig
559
tsv
89
txt
53
fastq
35
bed narrowPeak
30
bigBed narrowPeak
8
tagAlign
6
csv
2
bed bed3+
Organism
701
Homo sapiens
Biosample type
544
tissue
115
cell line
22
in vitro differentiated cells
20
primary cell
Organ
450
connective tissue
386
adipose tissue
142
bone element
58
artery
58
blood vessel
58
heart
58
vasculature
32
epithelium
32
pancreas
27
blood
27
bodily fluid
8
kidney
7
spleen
3
liver
Project
683
AMP
18
HPAP
Genome assembly (visualization)
582
hg19
580
GRCh38
Lab
683
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent control
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
701 results
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total RNA-seq
RNA microarray
ChIP-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
5
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
52
6
GM12878
27
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
1
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