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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
7
WGBS
1
Hi-C
1
single cell RNA-seq
Assay category
510
DNA binding
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
336
transcription factor
88
histone
88
histone modification
82
recombinant protein
81
control
60
RNA binding protein
50
broad histone mark
38
narrow histone mark
24
chromatin remodeller
5
other context
5
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
503
bam
437
fastq
434
bigWig
406
bed narrowPeak
405
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
519
Homo sapiens
Biosample type
404
cell line
105
tissue
10
primary cell
Organ
366
liver
91
brain
42
blood
42
bodily fluid
15
spleen
6
epithelium
6
vasculature
4
pancreas
3
blood vessel
Project
519
AMP
Genome assembly (visualization)
380
GRCh38
372
hg19
Lab
519
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
October, 2017
BIOSAMPLE
ASSAY
519 results
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Clear Filters
ChIP-seq
WGBS
Hi-C
single cell RNA-seq
cell line
HepG2
360
1
1
GM12878
42
tissue
layer of hippocampus
22
caudate nucleus
15
spleen
13
2
substantia nigra
15
cingulate gyrus
14
+ See 5 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
See all biosamples
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