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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
735
total RNA-seq
84
RNA microarray
58
ChIP-seq
18
single cell RNA-seq
6
WGBS
3
pCHi-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
757
Transcription
DNA accessibility
58
DNA binding
6
DNA methylation
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
5
transcription factor
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
792
bam
765
bigWig
748
tsv
89
txt
58
tagAlign
32
bed narrowPeak
18
fastq
6
csv
2
bed bed3+
1
hic
Organism
908
Homo sapiens
Biosample type
730
tissue
90
cell line
68
primary cell
22
in vitro differentiated cells
2
stem cell
Organ
450
connective tissue
386
adipose tissue
196
liver
142
bone element
58
artery
58
blood vessel
58
heart
58
vasculature
32
epithelium
32
pancreas
8
kidney
Project
844
AMP
45
T1D
18
HPAP
4
community
1
ITG
Genome assembly (visualization)
767
hg19
758
GRCh38
Lab
844
AMP-T2D consortium
45
Kyle Gaulton, UCSD
18
Klaus Kaestner, Upenn
4
Anna Gloyn, Oxford
1
ITG
Audit category:
132
inconsistent ontology term
5
audit script error
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
912 results
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Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue
381
liver
143
50
1
bone element
84
bone tissue
58
kidney
5
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
52
6
EndoC_BH1
26
EndoC-BH1
1
1
HepG2
2
iPSC derived cell line
2
primary cell
Langerhans cell
12
pancreatic alpha cell
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 26 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
stem cell
SB Ad3.1
1
1
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