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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
519
total RNA-seq
84
RNA microarray
23
ChIP-seq
18
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
537
Transcription
DNA accessibility
23
DNA binding
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
5
transcription factor
2
narrow histone mark
Date released
634
February, 2021
400
November, 2017
374
August, 2017
355
May, 2021
253
October, 2019
241
May, 2020
231
August, 2021
135
July, 2018
115
May, 2019
87
July, 2019
80
April, 2019
78
November, 2018
75
December, 2017
74
October, 2018
60
February, 2023
60
May, 2022
56
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
February, 2020
25
June, 2019
20
November, 2019
16
April, 2018
15
October, 2017
12
September, 2018
9
April, 2020
8
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
December, 2019
4
May, 2023
2
June, 2018
1
August, 2018
1
March, 2019
1
October, 2022
Available data
536
bam
530
bigWig
527
tsv
89
txt
22
tagAlign
21
fastq
11
bed narrowPeak
6
bigBed narrowPeak
6
csv
3
bed broadPeak
2
bed bed3+
Organism
649
Homo sapiens
Biosample type
552
tissue
61
cell line
22
in vitro differentiated cells
14
primary cell
Organ
450
connective tissue
386
adipose tissue
142
bone element
58
artery
58
blood vessel
58
heart
58
vasculature
epithelium
32
pancreas
15
brain
8
kidney
2
liver
Project
637
AMP
12
HPAP
Genome assembly (visualization)
532
hg19
530
GRCh38
Lab
637
AMP-T2D consortium
12
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
5
audit script error
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
month_released!
February, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
649 results
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total RNA-seq
RNA microarray
ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
brain
15
kidney
5
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
52
6
iPSC derived cell line
2
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
primary cell
Langerhans cell
12
osteoblast
1
1
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