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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 545total RNA-seq
  • 84RNA microarray
  • 18single cell RNA-seq
  • 8ChIP-seq
  • 6WGBS
  • 3snDrop-seq
  • 2pCHi-C
Assay category
  • 563Transcription
  • DNA accessibility
  • 8DNA binding
  • 6DNA methylation
Target of assay
  • 5transcription factor
  • 3control
Date released
  • 666February, 2021
  • 406November, 2017
  • 400August, 2017
  • 365May, 2021
  • 281October, 2019
  • 241May, 2020
  • 237August, 2021
  • 168July, 2018
  • 120May, 2019
  • 101May, 2022
  • 100February, 2023
  • 100July, 2019
  • 94December, 2017
  • 80April, 2019
  • 78November, 2018
  • 76October, 2018
  • 60March, 2020
  • 59September, 2018
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 35November, 2019
  • 31June, 2019
  • 30January, 2019
  • 25February, 2020
  • 15October, 2017
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 6September, 2017
  • 5January, 2018
  • 5March, 2023
  • 4August, 2018
  • 4May, 2023
  • 4October, 2022
  • 3June, 2018
  • 1March, 2019
Available data
  • 559tsv
  • 554bam
  • 550bigWig
  • 89txt
  • 18fastq
  • 8tagAlign
  • 6csv
  • 5bed narrowPeak
  • 2bed bed3+
Organism
  • 666Homo sapiens
Biosample type
  • 537tissue
  • 87cell line
  • 22in vitro differentiated cells
  • 20primary cell
Organ
  • 450connective tissue
  • 386adipose tissue
  • 142bone element
  • 58artery
  • 58blood vessel
  • 58heart
  • 58vasculature
  • 32epithelium
  • 32pancreas
  • 8kidney
  • 2liver
Project
  • 648AMP
  • 18HPAP
Genome assembly (visualization)
  • 552hg19
  • 550GRCh38
Lab
  • 648AMP-T2D consortium
  • 18Klaus Kaestner, Upenn
Audit category:
  • 128inconsistent ontology term
  • 5audit script error
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

666 results

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Clear Filters
total RNA-seq
RNA microarray
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue381
bone element84
bone tissue58
kidney5
visceral abdominal adipose tissue3
cell line
smooth muscle cell of the coronary artery526
EndoC_BH126
iPSC derived cell line2
HepG21
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)18
adipocyte4
primary cell
Langerhans cell12
pancreatic alpha cell6
osteoblast11
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