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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
31
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
Assay category
DNA accessibility
65
Transcription
31
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
105
bam
100
bigWig
65
tsv
23
bed bedMethyl
23
bed narrowPeak
23
bigBed bedMethyl
23
bigBed narrowPeak
4
bed bed3+
4
hdf5
Organism
131
Homo sapiens
Biosample type
69
tissue
62
primary cell
Organ
30
connective tissue
26
heart
20
musculature of body
19
epithelium
16
brain
13
kidney
12
adipose tissue
10
liver
10
vasculature
9
blood vessel
6
pancreas
5
limb
4
eye
2
artery
2
pericardium
Project
131
AMP
Genome assembly (visualization)
107
hg19
96
GRCh38
Lab
131
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
November, 2020
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
tissue
heart left ventricle
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
primary cell
skeletal muscle satellite cell
1
8
1
mesenchymal stem cell
7
cardiac fibroblast
5
1
epithelial cell of proximal tubule
1
3
1
cardiac muscle cell
3
1
+ See 21 more…
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