Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
53
WGBS
37
single cell RNA-seq
18
small RNA-seq
15
RRBS
11
Hi-C
1
MPRA
Assay category
125
Transcription
DNA accessibility
68
DNA methylation
11
3D chromatin structure
Target of assay
3
control
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
80
bam
77
bigWig
74
zippedFastqFolder
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
txt
6
fastq
4
bed bed3+
4
hdf5
3
bedpe bed3+
3
cool
3
hic
Organism
204
Homo sapiens
Biosample type
108
primary cell
96
tissue
1
cell line
Organ
57
epithelium
56
pancreas
30
liver
21
heart
18
connective tissue
16
brain
12
adipose tissue
11
musculature of body
10
kidney
10
vasculature
9
blood vessel
5
limb
2
artery
2
pericardium
1
eye
Project
128
AMP
77
HPAP
Genome assembly (visualization)
87
hg19
73
GRCh38
Lab
102
AMP-T2D consortium
77
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
3
audit script error
2
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
October, 2018
BIOSAMPLE
ASSAY
205 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
WGBS
single cell RNA-seq
small RNA-seq
RRBS
Hi-C
MPRA
primary cell
Langerhans cell
33
pancreatic alpha cell
25
1
pancreatic beta cell
16
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
+ See 24 more…
tissue
liver
22
1
heart left ventricle
2
4
1
islet of Langerhans
6
1
omental fat pad
4
1
right lobe of liver
2
1
2
+ See 24 more…
cell line
MIN6
1
See all biosamples
Download