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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
17
small RNA-seq
12
RRBS
8
Hi-C
6
ChIP-seq
4
WGBS
3
single cell RNA-seq
Assay category
54
Transcription
16
DNA methylation
DNA accessibility
8
3D chromatin structure
6
DNA binding
Target of assay
9
control
Date released
608
February, 2021
406
November, 2017
400
August, 2017
362
May, 2021
253
October, 2019
241
May, 2020
168
July, 2018
145
August, 2021
101
May, 2022
99
May, 2019
95
February, 2023
94
December, 2017
78
July, 2019
78
November, 2018
76
October, 2018
59
September, 2018
56
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
23
April, 2019
23
June, 2019
21
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
63
bam
60
bigWig
54
tsv
14
bed bedMethyl
14
bigBed bedMethyl
6
bed bed3+
6
fastq
4
hdf5
Organism
84
Homo sapiens
Biosample type
59
tissue
25
primary cell
Organ
heart
18
connective tissue
16
brain
13
epithelium
12
adipose tissue
12
pancreas
10
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
5
limb
2
artery
2
pericardium
eye
Project
84
AMP
Genome assembly (visualization)
72
hg19
58
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
eye
heart
BIOSAMPLE
ASSAY
84 results
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total RNA-seq
small RNA-seq
RRBS
Hi-C
ChIP-seq
WGBS
single cell RNA-seq
tissue
islet of Langerhans
1
6
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 19 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 14 more…
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