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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
43
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
Assay category
121
Transcription
27
DNA methylation
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
77
bigWig
74
bam
65
tsv
38
fastq
23
bed bedMethyl
23
bigBed bedMethyl
19
zippedFastqFolder
4
bed bed3+
4
hdf5
Organism
156
Homo sapiens
Biosample type
87
primary cell
69
tissue
Organ
29
epithelium
22
pancreas
21
heart
18
connective tissue
16
brain
12
adipose tissue
10
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
5
limb
2
artery
2
pericardium
1
eye
Project
100
AMP
56
HPAP
Genome assembly (visualization)
84
hg19
73
GRCh38
Lab
100
AMP-T2D consortium
56
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
November, 2020
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 23 more…
tissue
heart left ventricle
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
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