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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
50
ChIP-seq
41
WGBS
34
single cell RNA-seq
1
pCHi-C
Assay category
250
Transcription
DNA accessibility
50
DNA binding
41
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
666
February, 2021
400
August, 2017
365
May, 2021
315
November, 2017
241
May, 2020
237
August, 2021
196
October, 2019
168
July, 2018
101
May, 2022
100
February, 2023
94
December, 2017
92
May, 2019
84
July, 2019
80
April, 2019
78
November, 2018
76
October, 2018
59
September, 2018
58
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
14
November, 2020
13
February, 2020
10
December, 2019
9
April, 2020
6
September, 2017
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
244
bam
215
bigWig
189
tsv
74
zippedFastqFolder
50
tagAlign
27
bed narrowPeak
6
fastq
6
txt
Organism
342
Homo sapiens
Biosample type
220
tissue
121
primary cell
1
cell line
Organ
214
liver
47
pancreas
41
epithelium
1
musculature of body
Project
223
AMP
74
HPAP
45
T1D
Genome assembly (visualization)
215
hg19
207
GRCh38
Lab
197
AMP-T2D consortium
74
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Audit category:
4
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
January, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
342 results
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total RNA-seq
ChIP-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
liver
163
50
islet of Langerhans
6
skeletal muscle tissue
1
primary cell
Langerhans cell
33
pancreatic alpha cell
25
pancreatic beta cell
16
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 25 more…
cell line
HepG2
1
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