Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 182total RNA-seq
  • 165ChIP-seq
  • 17pCHi-C
  • 1DNAme array
Assay category
  • 182Transcription
  • 165DNA binding
  • DNA accessibility
  • 1DNA methylation
Target of assay
  • 140histone
  • 140histone modification
  • 76broad histone mark
  • 64narrow histone mark
  • 16transcription factor
  • 9control
  • 5RNA binding protein
Date released
  • 666February, 2021
  • 406November, 2017
  • 400August, 2017
  • 365May, 2021
  • 281October, 2019
  • 241May, 2020
  • 237August, 2021
  • 168July, 2018
  • 120May, 2019
  • 101May, 2022
  • 100February, 2023
  • 100July, 2019
  • 94December, 2017
  • 80April, 2019
  • 78November, 2018
  • 76October, 2018
  • 60March, 2020
  • 59September, 2018
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 35November, 2019
  • 31June, 2019
  • 30January, 2019
  • 25February, 2020
  • 15October, 2017
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 6September, 2017
  • 5January, 2018
  • 5March, 2023
  • 4August, 2018
  • 4May, 2023
  • 4October, 2022
  • 3June, 2018
  • 1March, 2019
Available data
  • 298bigWig
  • 264bam
  • 173tsv
  • 120bed narrowPeak
  • 90tagAlign
  • 2bed bed3+
Organism
  • 365Homo sapiens
Biosample type
  • 193primary cell
  • 127in vitro differentiated cells
  • 40tissue
  • 5cell line
Organ
  • 45pancreas
  • 10epithelium
  • 3heart
  • 2connective tissue
  • 2embryo
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 212AMP
  • 153T1D
Genome assembly (visualization)
  • 298hg19
  • 263GRCh38
Lab
  • 230Kyle Gaulton, UCSD
  • 135AMP-T2D consortium
Audit category:
  • 74inconsistent ontology term
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

365 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
DNAme array
primary cell
monocyte528511
CD8-positive, alpha-beta T cell2331
naive thymus-derived CD4-positive, alpha-beta T cell21
CD4-positive, alpha-beta T cell2
neutrophil11
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell537
induced pluripotent stem cell9
pancreatic PP cell3
cardiac fibroblast1
tissue
islet of Langerhans36
cardiac atrium1
cardiac ventricle1
pancreas1
thymus1
cell line
EndoC_BH141
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego