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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
24
total RNA-seq
4
Hi-C
4
pCHi-C
Assay category
181
DNA binding
DNA accessibility
24
Transcription
4
3D chromatin structure
Target of assay
155
histone
155
histone modification
126
narrow histone mark
29
broad histone mark
26
control
Date released
600
February, 2021
400
August, 2017
400
November, 2017
365
May, 2021
241
May, 2020
213
October, 2019
171
August, 2021
168
July, 2018
101
May, 2022
100
February, 2023
94
December, 2017
80
July, 2019
78
November, 2018
76
October, 2018
65
May, 2019
59
September, 2018
57
April, 2019
56
September, 2020
54
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
28
June, 2019
22
February, 2020
15
October, 2017
14
November, 2020
9
April, 2020
7
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
March, 2019
1
May, 2023
Available data
168
bam
142
bigWig
131
bed narrowPeak
49
tagAlign
30
bigBed narrowPeak
10
tsv
3
bedpe bed3+
3
hic
1
bed bed3+
1
hdf5
1
tagAlign bed3+
Organism
213
Homo sapiens
Biosample type
195
tissue
14
cell line
4
in vitro differentiated cells
Organ
85
brain
63
limb
41
blood vessel
vasculature
39
nerve
28
epithelium
kidney
23
artery
20
eye
18
vein
14
pancreas
8
heart
6
liver
4
gonad
4
ovary
1
connective tissue
1
lymph node
1
pituitary gland
Project
213
AMP
Genome assembly (visualization)
147
hg19
144
GRCh38
Lab
213
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
kidney
vasculature
BIOSAMPLE
ASSAY
213 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
21
14
4
tibial nerve
35
4
heart
5
2
1
brain
5
1
liver
5
1
+ See 75 more…
cell line
Panc1
13
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
cardiomyocytes (cardiac muscle cell)
1
1
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