Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
74
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
74
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
1
October, 2019
Available data
438
bam
420
bigWig
401
tsv
41
fastq
9
tagAlign
8
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
483
Homo sapiens
Biosample type
481
tissue
2
primary cell
1
in vitro differentiated cells
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
484
AMP
Genome assembly (visualization)
420
GRCh38
419
hg19
Lab
484
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
organ_slims!
lung
vasculature
BIOSAMPLE
ASSAY
484 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download