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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 73ChIP-seq
  • 6WGBS
  • 3small RNA-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • 73DNA binding
  • DNA accessibility
  • 6DNA methylation
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 17transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 386February, 2021
  • 56August, 2017
  • 23October, 2018
  • 12July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1March, 2020
  • 1May, 2023
Available data
  • 437bam
  • 419bigWig
  • 401tsv
  • 41fastq
  • 8tagAlign
  • 7bed narrowPeak
  • 6bigBed narrowPeak
  • 4bed bed3+
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed broadPeak
  • 1bedpe bed3+
Organism
  • 482Homo sapiens
Biosample type
  • 480tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 483AMP
Genome assembly (visualization)
  • 419GRCh38
  • 418hg19
Lab
  • 483AMP-T2D consortium
Audit category:
  • 12missing controlled_by
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

483 results

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Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue382231
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue71211
omental fat pad5111
white adipose tissue12
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
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