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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
277
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
54
transcription factor
37
control
13
RNA binding protein
10
chromatin remodeller
Date released
91
November, 2017
84
October, 2019
28
May, 2019
27
December, 2018
18
January, 2019
16
July, 2019
15
November, 2018
15
October, 2017
12
February, 2020
2
March, 2020
Available data
267
bam
240
bigWig
223
bed narrowPeak
148
bigBed narrowPeak
117
tagAlign
78
fastq
26
tsv
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
308
Homo sapiens
Biosample type
232
tissue
60
cell line
16
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
308
AMP
Genome assembly (visualization)
236
GRCh38
193
hg19
Lab
308
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
organ_slims!
pituitary gland
vein
BIOSAMPLE
ASSAY
308 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 69 more…
cell line
GM12878
60
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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