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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • 61total RNA-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1pCHi-C
Assay category
  • 99DNA binding
  • 67Transcription
  • DNA accessibility
  • 53D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 21control
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 58February, 2021
  • 50May, 2019
  • 41October, 2019
  • 9July, 2019
  • 6August, 2021
  • 4March, 2020
  • 3February, 2020
  • 3November, 2017
Available data
  • 159bam
  • 137bigWig
  • 73bed narrowPeak
  • 69bigBed narrowPeak
  • 68tsv
  • 6tagAlign
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 3fastq
  • 3hic
  • 2bed bed3+
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 174Homo sapiens
Biosample type
  • 90tissue
  • 58cell line
  • 26primary cell
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 174AMP
Genome assembly (visualization)
  • 139hg19
  • 132GRCh38
Lab
  • 174AMP-T2D consortium
Audit category:
  • 1audit script error
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

174 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial artery231
aorta1314121
ascending aorta162
thoracic aorta162
coronary artery51
cell line
smooth muscle cell of the coronary artery652
primary cell
endothelial cell of umbilical vein172
brain microvascular endothelial cell31
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
smooth muscle cell of the coronary artery1
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