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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
73
DNA binding
14
Transcription
DNA accessibility
Target of assay
54
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
10
February, 2018
8
August, 2021
8
December, 2017
2
May, 2021
1
January, 2018
Available data
87
bam
78
fastq
75
bigWig
60
bed narrowPeak
53
bigBed narrowPeak
14
tsv
2
bed bed3+
Organism
88
Homo sapiens
Biosample type
67
cell line
21
in vitro differentiated cells
Organ
702
liver
700
pancreas
617
connective tissue
471
adipose tissue
352
epithelium
276
heart
176
kidney
152
vasculature
149
blood vessel
147
bone element
132
brain
86
artery
63
limb
59
blood
59
bodily fluid
48
musculature of body
32
nerve
29
embryo
26
eye
21
spleen
13
vein
10
lung
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
75
GRCh38
75
hg19
1
hg18
Lab
88
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
2
inconsistent control read length
assay_slims!
DNA accessibility
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
total RNA-seq
GRO-seq
cell line
GM12878
59
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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