Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
68
total RNA-seq
40
ChIP-seq
6
Hi-C
5
RRBS
3
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
71
Transcription
DNA accessibility
40
DNA binding
6
3D chromatin structure
6
DNA methylation
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
6
control
Date released
142
February, 2021
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
6
March, 2020
4
February, 2023
2
February, 2020
1
May, 2021
1
May, 2022
1
October, 2019
Available data
92
bigWig
88
txt
82
bam
68
tsv
27
bed narrowPeak
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
210
Homo sapiens
Biosample type
196
tissue
14
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
209
AMP
1
T1D
Genome assembly (visualization)
96
hg19
78
GRCh38
Lab
209
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
92
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
210 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ChIP-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
tissue
bone element
84
bone tissue
58
skeletal muscle tissue
1
22
4
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
+ See 8 more…
primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
megakaryocyte
1
See all biosamples
Download