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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
40
total RNA-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
Assay category
223
DNA binding
DNA accessibility
47
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
105
October, 2019
91
November, 2017
28
May, 2019
17
July, 2019
15
October, 2017
13
February, 2020
8
February, 2023
3
June, 2019
2
March, 2020
Available data
211
bam
189
bigWig
172
bed narrowPeak
118
tagAlign
96
bigBed narrowPeak
31
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
4
txt
3
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
tagAlign bed3+
Organism
282
Homo sapiens
Biosample type
262
tissue
20
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
282
AMP
Genome assembly (visualization)
185
GRCh38
143
hg19
Lab
282
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
total RNA-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
layer of hippocampus
23
brain
20
1
1
islet of Langerhans
2
14
4
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
retinal pigment epithelial cell
3
1
cerebellar granule cell
2
+ See 2 more…
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