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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • 17total RNA-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
Assay category
  • 218DNA binding
  • DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • 31control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 85October, 2019
  • 28May, 2019
  • 16July, 2019
  • 15October, 2017
  • 12February, 2020
  • 2March, 2020
Available data
  • 208bam
  • 187bigWig
  • 170bed narrowPeak
  • 118tagAlign
  • 94bigBed narrowPeak
  • 26tsv
  • 18fastq
  • 15bed broadPeak
  • 6bigBed broadPeak
  • 3bed bed3+
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1tagAlign bed3+
Organism
  • 249Homo sapiens
Biosample type
  • 233tissue
  • 16primary cell
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 249AMP
Genome assembly (visualization)
  • 183GRCh38
  • 140hg19
Lab
  • 249AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

249 results

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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
layer of hippocampus23
brain2011
substantia nigra161
temporal lobe1511
caudate nucleus151
primary cell
astrocyte of the cerebellum31
brain microvascular endothelial cell31
choroid plexus epithelial cell31
cerebellar granule cell2
Purkinje cell1
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