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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 153ChIP-seq
  • 6WGBS
  • 5pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 153DNA binding
  • DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 78histone
  • 78histone modification
  • 44broad histone mark
  • 40transcription factor
  • 35control
  • 33narrow histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 450February, 2021
  • 123August, 2017
  • 23October, 2018
  • 18July, 2019
  • 12June, 2019
  • 4February, 2023
  • 4November, 2020
  • 3August, 2021
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1May, 2023
  • 1October, 2019
Available data
  • 579bam
  • 552bigWig
  • 478tsv
  • 97fastq
  • 58bed narrowPeak
  • 22tagAlign
  • 15bed bed3+
  • 15bigBed narrowPeak
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bed broadPeak
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 649Homo sapiens
Biosample type
  • 539tissue
  • 79in vitro differentiated cells
  • 31primary cell
  • 1stem cell
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 649AMP
  • 1T1D
Genome assembly (visualization)
  • 556hg19
  • 552GRCh38
Lab
  • 647AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 15inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

650 results

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Clear Filters
total RNA-seq
ChIP-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue382231
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue71211
omental fat pad5111
in vitro differentiated cells
adipocyte5671
immature adipocyte2
cardiac fibroblast1
osteoblast1
preadipocyte1
primary cell
mesenchymal stem cell7
cardiac fibroblast51
osteoblast51
pancreatic stellate cell4
mesenchymal stem cell of adipose11
stem cell
mesenchymal stem cell1
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