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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 129ChIP-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1RNA microarray
Assay category
  • 201Transcription
  • 129DNA binding
  • DNA accessibility
  • 53DNA methylation
  • 83D chromatin structure
Target of assay
  • 93histone
  • 93histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • 30control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 47September, 2018
  • 41May, 2022
  • 40February, 2023
  • 33April, 2018
  • 33July, 2018
  • 32February, 2021
  • 28October, 2019
  • 26August, 2017
  • 19December, 2017
  • 16September, 2020
  • 15November, 2019
  • 13July, 2019
  • 10May, 2021
  • 6August, 2021
  • 6December, 2019
  • 6June, 2019
  • 6November, 2017
  • 6November, 2020
  • 5May, 2019
  • 4March, 2020
  • 3August, 2018
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 275bam
  • 249bigWig
  • 225fastq
  • 155tsv
  • 97bed narrowPeak
  • 41zippedFastqFolder
  • 36bigBed narrowPeak
  • 7tagAlign
  • 6bed bedMethyl
  • 6bed broadPeak
  • 6bigBed bedMethyl
  • 6bigBed broadPeak
  • 6hic
  • 5bed bed3+
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
Organism
  • 400Homo sapiens
Biosample type
  • 315primary cell
  • 59cell line
  • 24in vitro differentiated cells
  • 3tissue
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 294AMP
  • 103HPAP
  • 4T1D
Genome assembly (visualization)
  • 261hg19
  • 243GRCh38
Lab
  • 292AMP-T2D consortium
  • 103Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 70inconsistent ontology term
  • 5audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

401 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell521312311
pancreatic beta cell211312161
pancreatic ductal cell41310
pancreatic acinar cell48121
endothelial cell of umbilical vein172
cell line
EndoC_BH133151621
glomerular visceral epithelial cell1
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina2
renal glomerulus1
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