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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 134ChIP-seq
  • 93single cell RNA-seq
  • 72total RNA-seq
  • 8WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 166Transcription
  • 134DNA binding
  • DNA accessibility
  • 10DNA methylation
  • 33D chromatin structure
Target of assay
  • 97histone
  • 97histone modification
  • 57broad histone mark
  • 40narrow histone mark
  • 20control
  • 17transcription factor
  • 11RNA binding protein
Date released
  • 92August, 2021
  • 58February, 2021
  • 57April, 2019
  • 40May, 2024
  • 21July, 2019
  • 21May, 2019
  • 8October, 2019
  • 7March, 2020
  • 5June, 2019
  • 3February, 2020
  • 3May, 2021
  • 1February, 2023
Available data
  • 190bigWig
  • 169bam
  • 168tsv
  • 114bed narrowPeak
  • 64bigBed narrowPeak
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 6tagAlign
  • 3bedpe bed3+
  • 3hic
Organism
  • 316Homo sapiens
Biosample type
  • 247tissue
  • 58cell line
  • 10primary cell
  • 1in vitro differentiated cells
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 316AMP
Genome assembly (visualization)
  • 189GRCh38
  • 149hg19
Lab
  • 276AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
Audit category:
  • 5inconsistent ontology term
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

316 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle351834111
left cardiac atrium4018
heart right ventricle13171211
right cardiac atrium61811
heart1414111
cell line
smooth muscle cell of the coronary artery652
primary cell
cardiac fibroblast51
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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