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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 64single cell RNA-seq
  • 60total RNA-seq
  • 52ChIP-seq
  • 4RRBS
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • DNA accessibility
  • 125Transcription
  • 52DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 60August, 2021
  • 47September, 2023
  • 27October, 2019
  • 23April, 2019
  • 10July, 2019
  • 8February, 2021
  • 5May, 2019
  • 3December, 2019
  • 3June, 2019
  • 3May, 2023
  • 2March, 2020
Available data
  • 64bam
  • 62txt
  • 51bigWig
  • 39bed narrowPeak
  • 24bigBed narrowPeak
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 191Homo sapiens
Biosample type
  • 149tissue
  • 24primary cell
  • 18cell line
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 144AMP
  • 47KPMP
Genome assembly (visualization)
  • 56hg19
  • 51GRCh38
Lab
  • 81AMP-T2D consortium
  • 61Katalin Susztak, Upenn
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 22inconsistent ontology term
  • 7audit script error
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

191 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
small RNA-seq
tissue
kidney64492711
metanephros11
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
primary cell
epithelial cell of proximal tubule1101
kidney epithelial cell151
renal cortical epithelial cell11
glomerular endothelial cell1
kidney glomerular epithelial cell1
cell line
RCC 7860 HIF1a re-expression14
RCC 7860 vector131
RCC 7860 HIF2a over-expression13
HEK293T2
RCC 7860 VHL1
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