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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
4
Hi-C
2
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
DNA accessibility
6
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
25
histone
histone modification
18
broad histone mark
7
narrow histone mark
6
control
Date released
5
July, 2019
5
October, 2019
2
February, 2020
1
March, 2020
1
May, 2019
Available data
7
bam
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
14
Homo sapiens
Biosample type
14
tissue
Organ
659
liver
622
pancreas
572
connective tissue
451
adipose tissue
308
epithelium
219
heart
161
kidney
147
bone element
107
vasculature
104
blood vessel
72
artery
62
brain
59
blood
59
bodily fluid
29
limb
28
musculature of body
26
eye
25
embryo
17
spleen
nerve
10
lung
4
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
14
AMP
Genome assembly (visualization)
1
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
nerve
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
tibial artery
5
1
gastrocnemius medialis
4
1
muscle of leg
1
1
bladder (urinary bladder)
1
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