Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 552ChIP-seq
  • 189total RNA-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 552DNA binding
  • 193Transcription
  • DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 194May, 2020
  • 63December, 2017
  • 52August, 2017
  • 50November, 2018
  • 35August, 2021
  • 20May, 2022
  • 10July, 2019
  • 6October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3March, 2020
  • 2February, 2021
  • 1December, 2018
  • 1February, 2020
Available data
  • 673bam
  • 596bigWig
  • 461fastq
  • 413bed narrowPeak
  • 352bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 8bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 762Homo sapiens
Biosample type
  • 400cell line
  • 336tissue
  • 15in vitro differentiated cells
  • 11primary cell
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 762AMP
Genome assembly (visualization)
  • 597hg19
  • 523GRCh38
Lab
  • 711AMP-T2D consortium
  • 31Bing Ren, UCSD
  • 20Karen Mohlke, UNC
Audit category:
  • 27inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

762 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG23781412221
tissue
liver145167311111
right lobe of liver10312
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte451
endothelial cell of hepatic sinusoid1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego