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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA binding
6
DNA methylation
Target of assay
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
10
July, 2019
7
August, 2017
5
March, 2020
2
February, 2020
2
June, 2019
1
May, 2019
1
May, 2022
Available data
10
bam
9
tsv
7
bigWig
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
Organism
28
Homo sapiens
Biosample type
23
tissue
5
primary cell
Organ
660
liver
622
pancreas
572
connective tissue
451
adipose tissue
epithelium
219
heart
161
kidney
147
bone element
107
vasculature
104
blood vessel
72
artery
62
brain
59
blood
59
bodily fluid
29
limb
28
musculature of body
26
eye
25
embryo
17
spleen
16
nerve
10
lung
4
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
11
hg19
7
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
epithelium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
3
1
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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