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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
11
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
74
DNA binding
DNA accessibility
14
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
57
histone
57
histone modification
36
broad histone mark
21
narrow histone mark
17
control
Date released
39
October, 2019
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
3
February, 2020
1
May, 2022
Available data
63
bam
62
bigWig
51
bed narrowPeak
38
bigBed narrowPeak
15
tagAlign
14
tsv
13
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
101
Homo sapiens
Biosample type
88
tissue
13
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
66
hg19
48
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
thymus
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
tibial nerve
35
5
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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