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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397total RNA-seq
  • 218ChIP-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 10MeRIP-seq
  • 9Hi-C
  • 2Capture-C
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 479Transcription
  • 218DNA binding
  • DNA accessibility
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 151histone
  • 151histone modification
  • 78broad histone mark
  • 73narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 183August, 2017
  • 157July, 2018
  • 58September, 2018
  • 53October, 2018
  • 47May, 2022
  • 45May, 2021
  • 43February, 2023
  • 39April, 2018
  • 35November, 2019
  • 32February, 2021
  • 16September, 2020
  • 14October, 2019
  • 10March, 2020
  • 10November, 2020
  • 6July, 2019
  • 6September, 2017
  • 4August, 2021
  • 4November, 2018
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1February, 2020
  • 1June, 2018
  • 1March, 2019
Available data
  • 614bam
  • 572bigWig
  • 415tsv
  • 410fastq
  • 140bed narrowPeak
  • 59bigBed narrowPeak
  • 41zippedFastqFolder
  • 22bed bed3+
  • 19tagAlign
  • 12bed broadPeak
  • 7bedpe bed3+
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 765Homo sapiens
Biosample type
  • 423tissue
  • 275primary cell
  • 72cell line
  • 3in vitro differentiated cells
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 657AMP
  • 103HPAP
  • 13T1D
Genome assembly (visualization)
  • 579hg19
  • 568GRCh38
Lab
  • 645AMP-T2D consortium
  • 103Klaus Kaestner, Upenn
  • 12Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 3Bing Ren, UCSD
Audit category:
  • 62inconsistent ontology term
  • 3audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

773 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
MeRIP-seq
Hi-C
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans278506431
body of pancreas33522
pancreas2162111
endocrine pancreas16
primary cell
pancreatic alpha cell521312311
pancreatic beta cell211312161
pancreatic ductal cell41310
pancreatic acinar cell48121
pancreatic endocrine cell23
cell line
EndoC_BH133156121
Panc1131
in vitro differentiated cells
pancreatic PP cell3
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