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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 61total RNA-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1RRBS
  • 1pCHi-C
Assay category
  • 102DNA binding
  • 67Transcription
  • DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 58February, 2021
  • 50May, 2019
  • 41October, 2019
  • 10July, 2019
  • 6August, 2021
  • 6November, 2017
  • 4March, 2020
  • 3February, 2020
Available data
  • 162bam
  • 140bigWig
  • 75bed narrowPeak
  • 71bigBed narrowPeak
  • 68tsv
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bed3+
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
Organism
  • 178Homo sapiens
Biosample type
  • 90tissue
  • 58cell line
  • 30primary cell
Organ
  • 773pancreas
  • 762liver
  • 650connective tissue
  • 483adipose tissue
  • 401epithelium
  • 316heart
  • 249brain
  • 191kidney
  • 178vasculature
  • 174blood vessel
  • 147bone element
  • 92artery
  • 78limb
  • 61musculature of body
  • 60blood
  • 60bodily fluid
  • 40nerve
  • 37embryo
  • 29eye
  • 23spleen
  • 19vein
  • 10lung
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 178AMP
Genome assembly (visualization)
  • 143hg19
  • 134GRCh38
Lab
  • 178AMP-T2D consortium
Audit category:
  • 1audit script error
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

178 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
RRBS
pCHi-C
tissue
tibial artery231
aorta1314121
ascending aorta162
thoracic aorta162
coronary artery51
cell line
smooth muscle cell of the coronary artery652
primary cell
endothelial cell of umbilical vein172
brain microvascular endothelial cell31
choroid plexus epithelial cell31
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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