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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1864ChIP-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1864DNA binding
  • DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1011histone modification
  • 1010histone
  • 514transcription factor
  • 512narrow histone mark
  • 497broad histone mark
  • 337control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 304August, 2017
  • 255October, 2019
  • 183May, 2021
  • 120May, 2019
  • 96May, 2020
  • 94December, 2017
  • 80April, 2019
  • 77November, 2018
  • 74October, 2018
  • 51August, 2021
  • 51July, 2019
  • 45March, 2020
  • 41May, 2022
  • 40May, 2024
  • 35December, 2018
  • 32September, 2018
  • 31June, 2019
  • 30January, 2019
  • 24February, 2018
  • 17February, 2021
  • 15November, 2019
  • 15October, 2017
  • 6September, 2017
  • 5February, 2023
  • 5January, 2018
  • 3October, 2022
  • 1August, 2018
  • 1March, 2019
  • 1March, 2023
Available data
  • 1661bam
  • 1482bigWig
  • 1319bed narrowPeak
  • 883fastq
  • 795bigBed narrowPeak
  • 391tagAlign
  • 108bed broadPeak
  • 108tsv
  • 79bigBed broadPeak
  • 62bed bed3+
  • 41zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2138Homo sapiens
Biosample type
  • 983tissue
  • 508cell line
  • 426primary cell
  • 213in vitro differentiated cells
  • 8stem cell
Organ
  • 572liver
  • 276pancreas
  • 228brain
  • 197epithelium
  • 174connective tissue
  • 154heart
  • 113vasculature
  • 109blood vessel
  • 82adipose tissue
  • 75limb
  • 63kidney
  • 60blood
  • 60bodily fluid
  • 53musculature of body
  • 39nerve
  • 36artery
  • 23embryo
  • 23spleen
  • 19vein
  • 10eye
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone element
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 1932AMP
  • 155T1D
  • 50HPAP
  • 1ITG
Genome assembly (visualization)
  • 1422hg19
  • 1350GRCh38
  • 5hg18
Lab
  • 1801AMP-T2D consortium
  • 221Kyle Gaulton, UCSD
  • 50Klaus Kaestner, Upenn
  • 40Patrick T. Ellinor, Broad
  • 22Bing Ren, UCSD
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 81inconsistent ontology term
  • 28inconsistent control
  • 4audit script error
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

2138 results

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Clear Filters
ChIP-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
liver1453111
islet of Langerhans71431
heart left ventricle354111
left cardiac atrium40
subcutaneous abdominal adipose tissue363
cell line
HepG237815221
GM1287860
EndoC_BH1151232
Panc1131
smooth muscle cell of the coronary artery6
primary cell
monocyte85211
pancreatic alpha cell13311
CD8-positive, alpha-beta T cell3321
pancreatic beta cell13161
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte671
embryonic stem cell401
neural progenitor cell21
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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