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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 574ChIP-seq
  • 51total RNA-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
Assay category
  • 574DNA binding
  • DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 68October, 2019
  • 62November, 2018
  • 59December, 2017
  • 28December, 2018
  • 27February, 2021
  • 24July, 2019
  • 21January, 2019
  • 20August, 2017
  • 16June, 2019
  • 14August, 2021
  • 14March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 7October, 2018
  • 6November, 2020
  • 3February, 2023
  • 1April, 2019
  • 1July, 2018
  • 1May, 2020
Available data
  • 627bam
  • 583bigWig
  • 504bed narrowPeak
  • 499fastq
  • 466bigBed narrowPeak
  • 79bed broadPeak
  • 79bigBed broadPeak
  • 68tsv
  • 26tagAlign
  • 21bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 3tar
  • 2ibed
Organism
  • 702Homo sapiens
Biosample type
  • 458cell line
  • 100primary cell
  • 84tissue
  • 57in vitro differentiated cells
  • 3stem cell
Organ
  • 409liver
  • 74epithelium
  • 56blood
  • 56bodily fluid
  • 38pancreas
  • 37vasculature
  • 34blood vessel
  • 28kidney
  • 20brain
  • 16vein
  • 14heart
  • 13musculature of body
  • 11embryo
  • 7artery
  • 5limb
  • 4connective tissue
  • 3eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 676AMP
  • 20T1D
  • 6HPAP
Genome assembly (visualization)
  • 609hg19
  • 531GRCh38
Lab
  • 668AMP-T2D consortium
  • 16Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 71inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

702 results

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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
RRBS
Hi-C
WGBS
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
cell line
HepG233552112
GM1287856
EndoC_BH12263
Panc1111
H1-hESC8
primary cell
skeletal muscle myoblast1511
endothelial cell of umbilical vein16
skeletal muscle satellite cell8
hepatocyte51
pancreatic alpha cell6
tissue
liver3611
body of pancreas7
brain511
thoracic aorta7
heart51
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)191
hepatocyte15
cardiomyocytes (cardiac muscle cell)2122
Posterior foregut3
definitive endodermal cell3
stem cell
hESC3
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