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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
DNA binding
62
Transcription
54
DNA accessibility
3
3D chromatin structure
Date released
60
February, 2021
35
February, 2023
July, 2019
7
October, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
Available data
72
bam
64
bigWig
63
tsv
54
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
3
hic
2
bedpe bed3+
1
tar
Organism
120
Homo sapiens
Biosample type
60
cell line
53
tissue
7
primary cell
Organ
722
pancreas
513
connective tissue
406
adipose tissue
382
epithelium
291
kidney
234
heart
229
liver
159
bone element
122
vasculature
120
blood vessel
104
artery
55
eye
51
limb
50
brain
47
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
106
GRCh38
74
hg19
Lab
120
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA binding
assay_slims!!
DNA binding
files.file_type!
ibed
month_released!
July, 2019
BIOSAMPLE
ASSAY
120 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
35
2
aorta
1
4
1
1
tibial artery
1
1
2
ascending aorta
1
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
kidney capillary endothelial cell
1
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