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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
42
ATAC-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
137
Transcription
43
DNA accessibility
4
3D chromatin structure
Date released
88
May, 2021
26
February, 2021
21
August, 2021
16
February, 2023
15
February, 2018
8
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
1
August, 2017
Available data
144
bam
143
bigWig
128
tsv
22
bed narrowPeak
20
fastq
7
bed bedgraph
6
bed bed3+
5
bed bed3
4
bedpe bed3+
4
hic
3
bigBed narrowPeak
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
190
Homo sapiens
Biosample type
1629
tissue
727
primary cell
190
in vitro differentiated cells
111
cell line
3
stem cell
Organ
29
connective tissue
7
embryo
2
epithelium
heart
Project
190
AMP
Genome assembly (visualization)
175
hg19
144
GRCh38
4
hg18
Lab
173
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
DNA methylation
assay_title!
pCHi-C
organ_slims!
heart
BIOSAMPLE
ASSAY
190 results
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total RNA-seq
ATAC-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
8
1
1
embryonic stem cell
7
6
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