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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
total RNA-seq
22
ATAC-seq
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
189
Transcription
26
DNA accessibility
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
7
July, 2019
5
January, 2019
3
February, 2021
3
March, 2020
3
November, 2018
2
August, 2017
2
February, 2020
1
December, 2018
1
October, 2019
Available data
181
bigWig
170
tsv
162
bam
25
bed narrowPeak
10
fastq
4
bed bed3+
4
bigBed narrowPeak
3
bed broadPeak
3
bigBed broadPeak
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
224
Homo sapiens
Biosample type
202
tissue
22
cell line
primary cell
Organ
498
connective tissue
446
pancreas
410
adipose tissue
280
kidney
242
heart
223
liver
158
bone element
118
blood vessel
118
vasculature
105
artery
81
epithelium
55
brain
55
limb
54
eye
48
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
8
nerve
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
224
AMP
Genome assembly (visualization)
185
hg19
162
GRCh38
Lab
171
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
assay_slims!
DNA binding
DNA methylation
biosample_type!
primary cell
BIOSAMPLE
ASSAY
224 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
1
1
1
1
right lobe of liver
3
1
2
2
C1 segment of cervical spinal cord
1
cell line
HepG2
14
1
2
2
2
1
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