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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
430
Transcription
276
DNA accessibility
DNA binding
55
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
24
July, 2019
14
June, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
6
October, 2019
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
351
bam
350
bigWig
315
fastq
264
tsv
153
zippedFastqFolder
59
bed narrowPeak
42
bigBed narrowPeak
24
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
788
Homo sapiens
Biosample type
1598
tissue
788
primary cell
196
in vitro differentiated cells
168
cell line
7
stem cell
Organ
314
epithelium
276
pancreas
27
connective tissue
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
343
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
368
hg19
313
GRCh38
Lab
341
AMP-T2D consortium
324
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
27
inconsistent ontology term
assay_slims!
DNA binding
DNA sequencing
audit.ERROR.category!
inconsistent control
organ_slims!
kidney
BIOSAMPLE
ASSAY
788 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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